This is default shopify url pattern so we can't change that. if you have any specific guideline regarding what you are trying to implement if you can share with me then I will be able to help you bit more.
for now I have added redirection to the urls let me know it that works for you.
- logo_192_by_192.png : https://workoutmeals.com.au/logo_192_by_192.png
- logo_192_by_192.png : //cdn.shopify.com/s/files/1/2780/3998/t/13/assets/logo_192_by_192.png?688
- pushcrew-sw.js : https://workoutmeals.com.au/pushcrew-sw.js
- pushcrew-sw.js : //cdn.shopify.com/s/files/1/2780/3998/t/13/assets/pushcrew-sw.js?688
- manifest.json : https://workoutmeals.com.au/manifest.json
- manifest.json : //cdn.shopify.com/s/files/1/2780/3998/t/13/assets/manifest.json?688